Thoughts on open notebooks, research, and social media

I remember thinking over a decade ago how valuable it would be if researchers kept open notebooks (aka digital commonplace books) like the one Kimberly Hirsh outlines in her article Dissertating in the Open: Keeping a Public Research Notebook. I'd give my right arm to have a dozen people in research areas I'm interested in…

👓 Dissertating in the Open: Keeping a Public Research Notebook | Kimberly Hirsh

Read Dissertating in the Open: Keeping a Public Research Notebook by Kimberly HirshKimberly Hirsh (Kimberly Hirsh)
I’m making a few notes to myself here to document my process for keeping a public research notebook. They might be of interest to you, too. First, I’m talking here mostly about keeping up with the literature. There are (in my opinion obvious) ethical implications of actually sharing your data on...

Reply to Open Science notebooks | Ryan Barrett

Replied to a post by Ryan BarrettRyan Barrett (
Notebooks like Jupyter and Observable are great for research, data science, and really any interactive computing or documentation. I want to start using them for ops/SRE projects too. Thomas Kluyver‘s bash_kernel works, but has lots of rough edges. Anyone have any other ideas?
I've been watching that space for a few years. Apparently you saw the same article push them into the broader mainstream consciousness. I would mention Mathematica, but you're certainly aware of it. There are a few other math-related platforms I've used, but I suspect they're not within the realm you're looking for. I've seen one or…

Following Open Pedagogy Notebook

Followed Open Pedagogy Notebook (

Sharing Practices, Building Community

There are many ways to begin a discussion of “Open Pedagogy.” Although providing a framing definition might be the obvious place to start, we want to resist that for just a moment to ask a set of related questions: What are your hopes for education, particularly for higher education? What vision do you work toward when you design your daily professional practices in and out of the classroom? How do you see the roles of the learner and the teacher? What challenges do your students face in their learning environments, and how does your pedagogy address them?

“Open Pedagogy,” as we engage with it, is a site of praxis, a place where theories about learning, teaching, technology, and social justice enter into a conversation with each other and inform the development of educational practices and structures. This site is dynamic, contested, constantly under revision, and resists static definitional claims. But it is not a site vacant of meaning or political conviction. In this brief introduction, we offer a pathway for engaging with the current conversations around Open Pedagogy, some ideas about its philosophical foundation, investments, and its utility, and some concrete ways that students and teachers—all of us learners—can “open” education. We hope that this chapter will inspire those of us in education to focus our critical and aspirational lenses on larger questions about the ideology embedded within our educational systems and the ways in which pedagogy impacts these systems. At the same time we hope to provide some tools and techniques to those who want to build a more empowering, collaborative, and just architecture for learning.

👓 What Open Education Taught Me | Open Pedagogy Notebook

Read What Open Education Taught Me by Jaime MarshJaime Marsh (Open Pedagogy Notebook)
A Keene State College undergraduate reflects on her experiences with Open Education:
So…for those of you just joining me on this 16 week journey through Tropical Marine Biology (and our 9 day trip to Turks and Caicos in 2 days), you might be wondering what all these blog posts are about, and why are we doing them? As a junior, and incoming senior studying Biology at Keene State College, several of my teachers have changed their teaching philosophy to open education. Open education is the philosophy and belief that people, even the world should produce, share, and build on knowledge that everyone has access to. It is believed that open education will promote a higher quality education and community that has been so limited by the textbook companies and licenses.
Nice student-written piece about open pedagogy within her biology program. Nice to see that the author has her own website where she also owns a copy of this article. Highlights, Quotes, & Marginalia is okay. YOU choose what YOU want to learn, and how YOU want to do it, and when YOU want to…

📺 Open science: Michael Nielsen at TEDxWaterloo | YouTube

Watched Open science: Michael Nielsen at TEDxWaterloo by Michael NielsenMichael Nielsen from YouTube

Michael Nielsen is one of the pioneers of quantum computation. Together with Ike Chuang of MIT, he wrote the standard text in the field, a text which is now one of the twenty most highly cited physics books of all time. He is the author of more than fifty scientific papers, including invited contributions to Nature and Scientific American. His research contributions include involvement in one of the first quantum teleportation experiments, named as one of Science Magazine's Top Ten Breakthroughs of the Year for 1998. Michael was a Fulbright Scholar at the University of New Mexico, and has worked at Los Alamos National Laboratory, as the Richard Chace Tolman Prize Fellow at Caltech, as Foundation Professor of Quantum Information Science at the University of Queensland, and as a Senior Faculty Member at the Perimeter Institute for Theoretical Physics. Michael left academia to write a book about open science, and the radical change that online tools are causing in the way scientific discoveries are made.

Sadly this area of science hasn't opened up as much as it likely should have in the intervening years. More scientists need to be a growing part of the IndieWeb movement and owning their own data, their content, and, yes, even their own publishing platforms. With even simple content management systems like WordPress researchers can…

👓 Interviewing my digital domains | W. Ian O’Byrne

Read Interviewing my digital domains by W. Ian O'ByrneW. Ian O'Byrne (W. Ian O'Bryne)

Alan Levine recently posted a series of questions to help others think through some of thoughts and motivations as we develop and maintain a domain of our own.

I’ve written a lot about this in the past, and I’ll try to include some links to content/posts as I respond to the prompts. This is a bit long as I get into the weeds, so consider yourself warned.

And now…let’s get to it…

Highlights, Quotes, & Marginalia Having a domain is important to me as I research, develop, and teach. Highlight (yellow) added on June 21, 2018 at 09:07AM example of a domain as thinking out loud or thought spacesblogging as thinking This should be a space where you can create the identity that you want to have.…

Idea for a spaced repetition user interface for

While I'm thinking about younger students, I thought I'd sketch out a bit of an add-on product that I wish had. Background/Set up I was looking at tools to pull annotations out of Kindle the other day and ran across Readwise again. Part of its functionality pulls highlights and annotations out of Kindle and…

WPCampus 2019 Draft Proposal: Dramatically extending a Domain of One’s Own with IndieWeb technology

Below is a draft proposal which I'm submitting for a possible upcoming talk at WPCampus from July 25-27, 2019 in Portland, OR. If you don't have the patience and can't wait for the details, feel free to reach out and touch base. I'm happy to walk people through it all before then. If you're looking…

👓 Writing synthetic notes of journal articles and book chapters | Raul Pacheco-Vega, PhD

Read Writing synthetic notes of journal articles and book chapters by Raul Pacheco-Vega (
Earlier this week I shared Dr. Katrina Firth’s modified version of the Cornell Method’s Notes Pages. I used the Cornell Notes method in 2013 and really didn’t click with me, so I simply moved on. Had I discovered Katrina’s modified version earlier I probably would have “clicked” with the...
Everything Notebook  ❧ by this I'm thinking he means commonplace book? Thursday, April 4, 2019 10:15 am
Bookmarked Paperpile: Modern reference and PDF management (

Manage your research library right in your browser

  • Save time with a smart, intuitive interface
  • Access your PDFs from anywhere
  • Format citations within Google Docs

… and much more

I know I've run across this tool in the past, sometime just after it launched. I remember thinking it was interesting, but it was missing some things for me. Perhaps it's worth another look to see how it has evolved and what it entails now? In some sense it does a lot of what I've…

A Sketch for an IndieWeb Bullet Journal

Over the past several weeks I've been thinking more and more about productivity solutions, bullet journals, and to do lists. This morning I serendipitously came back across a reply Paul Jacobson made about lab books on a post relating to bullet journals and thought I'd sketch out a few ideas. I like the lab book…
Kathleen did you own the domain where Planned Obsolescence1 was peer-reviewed? It may be one of the first major examples of book-length online academic samizdat of which I'm aware. Perhaps you know of others which could be documented? I suspect we could help provide additional exemplars and links to other web technology, platforms, plugins, etc.…

An Outline for Using Hypothesis for Owning your Annotations and Highlights

I was taken with Ian O'Byrne's righteous excitement in his video the other day over the realization that he could potentially own his online annotations using Hypothesis, that I thought I'd take a moment to outline a few methods I've used. There are certainly variations of ways for attempting to own one's own annotations using Hypothesis…